Okay, so this happens when:
1. You're performing a fresh installation, OR your previous version is lower than Gamma 4 (common since Gamma 4 is the new version).
2. Your forum software is XenForo.
3. Your server has high load, is shared with other users, or throttled in such a way that installing 2,000 phrases cannot be completed in less than 10 seconds.
The result is a database error that a phrase was already installed, even though it wasn't. This is now fixed in build 005. If you download it again, you shouldn't have any more problems like this for phrases.